PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004586m
Common NameCICLE_v10004586mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 601aa    MW: 68553.9 Da    PI: 4.7903
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004586mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.11e-872295983374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPilk 92 
                      e Ll++Ae v +++ e+a++lL++ + l+s++g+p+qR++ yf eAL++r+ r + ++  + +++ t++ + + ++++ +      +e  P+ k
  Ciclev10004586m 229 EFLLAAAEKVGDQQYERATRLLNQCEWLSSKNGNPVQRVVYYFSEALRERIDRDTGRIT-TKQTRMTRPFDFEVAIMSSNPttlaCHEQIPFSK 321
                      679**************************************************555554.334444444443444333322355799******* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      + ++t  qaIle  ++++r+HiiD++i +G++W  L+qaLasR       l+i +vg    ++k+ +eetg+rL +fA+++++pf++nv+++++
  Ciclev10004586m 322 IVQFTGIQAILENGAEAKRIHIIDLGIRNGVHWTVLMQALASRYdCTIELLKISAVGT---TEKQLIEETGKRLMSFAQSMNLPFSYNVVMVSD 412
                      *******************************************9445569********...5799***************************** PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      + +l+ + ++++++E++aV   l l ++ + +  le+    +++++++++P v+vv+e ea+hns+ F++rf+eal ++sa+fd+l+a + +++
  Ciclev10004586m 413 MLELKEDLFEIDNEETVAVYALLFLRSMIAFPNRLEN----IMRVIRKINPSVMVVTEIEANHNSPVFVNRFIEALFFFSAFFDCLDACMEPDN 502
                      ****************************977777777....***************************************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                       +r+  E ++    i+++va+eg+er+ r+ +l  Wr+ + + G+++++ls +   qa+l++++++ +   +++ + +sl+ gWk+ p+ svS+
  Ciclev10004586m 503 PHRTITELVFYTDGIRSMVAAEGEERETRNVKLDVWRAFFARYGMEEMELSMSSLYQARLMVKQFDcGSSCTIDINGKSLIVGWKGTPIKSVSV 596
                      ******************************************************************9999************************ PP

             GRAS 373 Wr 374
                      W+
  Ciclev10004586m 597 WK 598
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.268201577IPR005202Transcription factor GRAS
PfamPF035143.5E-85229598IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAKVVFSLER ISYGEVQDKL SSTDNRYETL EGEIAAKQFN SYGAEDWGES GAIDQLYSHN  60
GFYQDVSSEQ GFIFSKYQQP QQQEHLYSNY ELLDNLKFDI ASPPIQASLE EIAKFGEIPT  120
GTQGVVEPEK EKLFPFSSSS LELLRNYGSG FKRLNRERRI EPSNDKNTTF TKVESRKLSV  180
EEIMRIAGER FIRSCSRAVE DVVSMLSNPF DLSFSGLSDE EIRNVELAEF LLAAAEKVGD  240
QQYERATRLL NQCEWLSSKN GNPVQRVVYY FSEALRERID RDTGRITTKQ TRMTRPFDFE  300
VAIMSSNPTT LACHEQIPFS KIVQFTGIQA ILENGAEAKR IHIIDLGIRN GVHWTVLMQA  360
LASRYDCTIE LLKISAVGTT EKQLIEETGK RLMSFAQSMN LPFSYNVVMV SDMLELKEDL  420
FEIDNEETVA VYALLFLRSM IAFPNRLENI MRVIRKINPS VMVVTEIEAN HNSPVFVNRF  480
IEALFFFSAF FDCLDACMEP DNPHRTITEL VFYTDGIRSM VAAEGEERET RNVKLDVWRA  540
FFARYGMEEM ELSMSSLYQA RLMVKQFDCG SSCTIDINGK SLIVGWKGTP IKSVSVWKFL  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3925759833375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419398.10.0DELLA protein RGL1
TrEMBLA0A2H5N6800.0A0A2H5N680_CITUN; Uncharacterized protein
TrEMBLV4RFL40.0V4RFL4_9ROSI; Uncharacterized protein
STRINGXP_006419398.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157861014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-45RGA-like 2