PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004882m
Common NameCICLE_v10004882mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 477aa    MW: 50112 Da    PI: 8.3625
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004882mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-114368227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C ++ rtG+C yG+rC+F+H++
  Ciclev10004882m 43 DEADCIHYVRTGFCAYGSRCRFNHPR 68
                     6799********************96 PP
2zf-CCCH40.54.6e-1390114327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++++rtGtCkyG++Ck++H++
  Ciclev10004882m  90 QPVCQYYMRTGTCKYGASCKYHHPR 114
                      689********************96 PP
3zf-CCCH36.77.3e-12135160227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++t +Ck+G++CkF+H++
  Ciclev10004882m 135 GEKECSYYMKTRQCKFGATCKFHHPQ 160
                      7899********************97 PP
4zf-CCCH38.22.3e-12303328227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++ +C+++++tG Ck+G++C+F+H++
  Ciclev10004882m 303 GQQECQYYMKTGDCKFGSSCRFHHPR 328
                      6789********************96 PP
5zf-CCCH30.18.2e-10350374327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++C ++ + G Ck+G+ CkF H++
  Ciclev10004882m 350 AAPCTHYVQRGVCKFGPACKFDHPM 374
                      589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3894169IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-44168IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-94368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-64469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-54768IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90187115IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-1090114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-690115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-692114IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.939133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5135161IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9135160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.92301329IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6301328IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6304329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-6307329IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202347375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5350375IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-7350374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4352372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MERHGRVSEG SQSDPSPEWT APGTETGPEG LGVGAESYPE RPDEADCIHY VRTGFCAYGS  60
RCRFNHPRDR GSVMGAARAG GGEFPERVGQ PVCQYYMRTG TCKYGASCKY HHPRQGAGSV  120
SNVSLNYYGY PLRPGEKECS YYMKTRQCKF GATCKFHHPQ PAGVPAPTPS PAPQVAAVPT  180
PVPAPALYPP LQSPSVPSAQ QYGVVVARPP LLHGSYVQGP YGPVLVSPSM FSLQGWSPYA  240
TSLNPISSPG TGTQSSVGSS SIYGITQLSA SAPAYTGTYQ SLPSSVGPSS SSQKEHPFPE  300
RPGQQECQYY MKTGDCKFGS SCRFHHPREL IVPKMDVTLS PFGLPLRPGA APCTHYVQRG  360
VCKFGPACKF DHPMGMLSYS PSASSLADMP VAPYPVGSSI GTLAPSSASS DLRPELISGS  420
SKDSVSTRMS SSVSISSGSV GSILSKSGPV PHSSMQQSGQ SSGPSTADDS SAEART*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419655.10.0zinc finger CCCH domain-containing protein 58 isoform X1
RefseqXP_006489144.10.0zinc finger CCCH domain-containing protein 58 isoform X1
SwissprotQ6NPN31e-168C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLV4S2D80.0V4S2D8_9ROSI; Uncharacterized protein
STRINGXP_006489144.10.0(Citrus sinensis)
STRINGXP_006419655.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-143C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]