PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005102m
Common NameCICLE_v10005102mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 402aa    MW: 44840.7 Da    PI: 4.8349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005102mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-152875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Ciclev10005102m 28 RGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 75
                     89******************************99************97 PP
2Myb_DNA-binding52.41.3e-1681126148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ ++++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  Ciclev10005102m  81 RGNFTQEEEDTIIRLHESLGNR-WSKIASQLP-GRTDNEIKNVWNTHL 126
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-231978IPR009057Homeodomain-like
PROSITE profilePS5129414.0962375IPR017930Myb domain
SuperFamilySSF466894.87E-2926122IPR009057Homeodomain-like
SMARTSM007178.0E-122777IPR001005SANT/Myb domain
PfamPF002493.2E-142875IPR001005SANT/Myb domain
CDDcd001671.36E-83075No hitNo description
PROSITE profilePS5129425.59276130IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2779130IPR009057Homeodomain-like
SMARTSM007172.4E-1580128IPR001005SANT/Myb domain
PfamPF002492.0E-1581126IPR001005SANT/Myb domain
CDDcd001671.19E-1083126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVGSLKIFLL SQMGKGRAPC CDKSQVKRGP WSPGEDLRLI TFIQKHGHEN WRALPKQAGL  60
LRCGKSCRLR WINYLRPDVK RGNFTQEEED TIIRLHESLG NRWSKIASQL PGRTDNEIKN  120
VWNTHLKKRL SFRDVKKDQE SKESSSISSP SSSSSSTIIS SGKRRADTEL DEHQCDQNNY  180
VPKKPREGHG SMTVSEKLVQ QSSETEESNQ INTSKGVVMT TKELLDSSCS SDNSVVSNSS  240
QVDATRPKDQ MGTSQFGFSE PYDVAIGLNN LEEVNKPEII SISDTGLEIP LECDFDFWSM  300
LDNLGPFQSH EVEASQSTSF GEASDNSREV DSRTWFQYLE NELGLEATTE DEIQNSAKVA  360
AAATADPIPQ ETYETLLKPE VDPGVTYFQL WNASLQSSVC E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-27281304105C-Myb DNA-Binding Domain
1msf_C4e-27281304105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475333.10.0transcription factor MYB63
RefseqXP_024038620.10.0transcription factor MYB63
TrEMBLV4RMI10.0V4RMI1_9ROSI; Uncharacterized protein
STRINGXP_006422238.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.14e-76myb domain protein 58