PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005233m
Common NameCICLE_v10005233mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 363aa    MW: 39860.1 Da    PI: 9.2961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005233mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13290335655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Ciclev10005233m 290 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 335
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16287348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.62E-13288337No hitNo description
Gene3DG3DSA:4.10.280.101.6E-14289346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-12290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-10290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDSSTNHNYH QQSNPGLSRF NSAPTALLVN FTDSLESGGV NKSSFESERL ISRFMNSGGD  60
NSNNSSFQEF EVKSPVSYGN SQQSCSGLPP HYPRQSSAMD HNSYDLFLDQ SSRVKSVNSN  120
LVRQSSSPAG LFAKLSAQNG YASTKEVGSY GGVNGSNGDL SPSTKRLKSQ ISIPSRIPSS  180
LGMLSRVSEV ESDGPTHGKV RNGNGDAQFY STGFSYGSWN DSSHFTESFT DMKREQGNGE  240
LGNSVHMLSH HLSLPKTSAE MAAVEKFLQF QDSVPCKIRA KRGCATHPRS IAERVRRTRI  300
SERMRKLQEL VPNMDKQTNT ADMLDLAVDY IKDLQNQFKT LSDNRAKCKC SKIQKPVENQ  360
IV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421491.10.0transcription factor bHLH130
SwissprotQ66GR31e-102BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A2H5PTI40.0A0A2H5PTI4_CITUN; Uncharacterized protein
TrEMBLV4SCQ70.0V4SCQ7_9ROSI; Uncharacterized protein
STRINGXP_006421491.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]