PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10005596m

Common Name

CICLE_v10005596mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 279aa MW: 30580.2 Da PI: 8.5871

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10005596m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	51.3	2.5e-16	37	66	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPkti+++m+vkgLtl+h+kSHLQkYRl Ciclev10005596m 37 EATPKTIMRTMGVKGLTLYHLKSHLQKYRL 66 69***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-15	36	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-10	37	67	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.24E-5	38	67	IPR009057	Homeodomain-like
Pfam	PF14379	6.5E-27	110	156	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGMKWGHFIR SIRGVSTRSI MYGATSEIRV QLVVFIEATP KTIMRTMGVK GLTLYHLKSH 60 LQKYRLGKQA CKETTENSKD VSCVAESQDT GSSTTSSTRM VAQDPNDGYQ VTEALRVQME 120 VQRRLHEQLE VQRRLQLRIE AQGKYLQSIL EKACKALNDQ AIVAAGLEAA REELSELAIK 180 VSNDCQGMVP LENIKMPSIS ELAAALESKN ASTIPVRIGD CSVESCLTST SSPVSPMGLG 240 SQAAAMKKRP RPLFGNGESL PLEGNMRQEV EWVMPHIG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	251	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006493810.1	0.0	protein PHR1-LIKE 3 isoform X2
Swissprot	Q8LAJ7	1e-103	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	V4RJC2	0.0	V4RJC2_9ROSI; Uncharacterized protein
STRING	XP_006420903.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-88	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10005596m
Entrez Gene	18032270

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]