PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005649m
Common NameCICLE_v10005649mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 265aa    MW: 30393.9 Da    PI: 5.8773
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005649mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34311222102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y ++ed++++++isw+ +g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+kg+k+ll+
  Ciclev10005649m  31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNQMFRKGEKDLLC 115
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      ki+r+k 
  Ciclev10005649m 116 KIRRRKA 122
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3624115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.26E-3327120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5027120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-183154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3031120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEATNNITIS SCCDDNKGLL EYARKSTPPP FLLKTYMLIE DPATDNVISW NGDGTGFVVW  60
QPAEFARDLL PTLFKHSNFS SFVRQLNTYG FRKVATSRWE FCNQMFRKGE KDLLCKIRRR  120
KAWANRQQAA TAAATQQESH DEDQRSSSST SSLSEYNTLR DENKRLKKEN GNLSSELVSM  180
KRKCKELLDL VAKYANMDND DDDDDDDEDD DDHEINNNQR GPLIVKLFGV RFEVDEGERE  240
RKRKRKRAEI ISQSANILLS QSCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-20311204104Putative transcription factor
5d5x_B2e-20311204104Putative transcription factor
5d5x_E2e-20311204104Putative transcription factor
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245RKRKRK
2240246RKRKRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421321.10.0heat stress transcription factor B-3
SwissprotO222307e-71HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLV4SC630.0V4SC63_9ROSI; Uncharacterized protein
STRINGXP_006421321.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.15e-65heat shock transcription factor B3