PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005698m
Common NameCICLE_v10005698mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 28881.7 Da    PI: 7.9851
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005698mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ien   rqvtfskRrng+lKKA+ELSvLCda+v vi+fsstgklye+ss
  Ciclev10005698m  9 KKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSS 59
                     68***********************************************96 PP
2K-box55.32.9e-199417618100
            K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + el+ Lk+e+  L+    ++ G++L+ Ls+keLqqLe+qL +++ ++++ K+++lleqi++++ +e+++  en++Lrk++ee
  Ciclev10005698m  94 SAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEE 176
                      689************999**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.534161IPR002100Transcription factor, MADS-box
CDDcd002651.16E-42272No hitNo description
SuperFamilySSF554553.27E-33282IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.10690180IPR002487Transcription factor, K-box
PfamPF014861.5E-1494174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KAKELSVLCD ADVGVIVFSS TGKLYEFSSS  60
SMEHILSRYS KGIDLECQTN RNEEHGVPEL PPKSAELNAL KDEYARLRLA YMRMNGQELD  120
GLSFKELQQL EHQLSEGMLS VKDMKEQVLL EQIRRSRLME QKAMLENETL RKQMEELRRS  180
SSRSPLVEFD PLERRFSFTK LKADHCGCTS NENEDDHSDT SLHLGLSSEV RRKRKAPKIE  240
STGNDSGSQV ASD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20170170MEF2C
5f28_B3e-20170170MEF2C
5f28_C3e-20170170MEF2C
5f28_D3e-20170170MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During the reproductive phase, accumulates in immature buds and at the base of the floral organs, and in the receptacle, ovules, anther filaments, and stigma and style of open flowers. Later observed in sporogenous tissue of anthers. During male gametogenesis, expressed in the microspores before they separate from each other. Later present at high levels within pollen grains up to stage 13 of flower development, when anthers dehisce. During carpel development, first detected in developing ovules. After fertilization, confined to globular structures or nodules of proliferating free nuclear endosperm required for embryo development. Disappears from the endosperm at to the heart stage of embryo development, when very little nuclear endosperm remains. Never detected in developing embryos at any stage. In young seedlings, present everywhere except in a portion of the hypocotyl and in newly emerging leaves. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:17521410}.
UniprotTISSUE SPECIFICITY: Mostly expressed in pollen, roots, flowers and siliques, and to a lower extent, in stems and leaves. Expressed in the endosperm and in developing male and female gametophytes. Also present in seedlings. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:16028119, ECO:0000269|PubMed:17521410}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421311.10.0agamous-like MADS-box protein AGL18
RefseqXP_024042805.10.0agamous-like MADS-box protein AGL18
SwissprotQ9M2K81e-69AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A067DSV80.0A0A067DSV8_CITSI; Uncharacterized protein
TrEMBLA0A2H5QQR10.0A0A2H5QQR1_CITUN; Uncharacterized protein
TrEMBLV4SC550.0V4SC55_9ROSI; Uncharacterized protein
STRINGXP_006421311.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.16e-70AGAMOUS-like 18