PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005777m
Common NameCICLE_v10005777mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 235aa    MW: 26616.1 Da    PI: 7.1989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005777mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.6e-0784129454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er RR+r ++ +  L ++lP+      +K++K +i++ A + I++L
  Ciclev10005777m  84 RHVINERMRRERERQNYLALHSMLPPG-----TKNDKNSIVKTAANMIHEL 129
                      5899*********************97.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-1179145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.72580129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-684146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-484129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-486135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDEFLGDQFH GEGDIFFWLD NEALPVNQSA FVAYANRPRT EFVSQNAGNG SNSLSANKRM  60
IQFLRKIQPA KMEHPELDSE RGHRHVINER MRRERERQNY LALHSMLPPG TKNDKNSIVK  120
TAANMIHELR CCKQELERKN YELESNLGLK NGGTKIRVNV DNPTSGVDSM LEVLKCLKDL  180
GSSTRSIQAE FSDQKLAAVL DIETQMGAGA VEKDVQRALQ KVEDKLLFRH YQEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994RMRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420116.11e-176transcription factor bHLH92 isoform X1
TrEMBLV4S8X41e-175V4S8X4_9ROSI; Uncharacterized protein
STRINGXP_006420116.11e-175(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-39bHLH family protein