PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005863m
Common NameCICLE_v10005863mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 217aa    MW: 24605 Da    PI: 8.4701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005863mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-18126176255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp     k  r++lg+f++  +Aaka++ a+ +++g
  Ciclev10005863m 126 HYRGVRRRP-WGKYAAEIRDP---ArKGSRVWLGTFDSDVDAAKAYDSAAFRMRG 176
                      8********.**********8...4445**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-31125185IPR001471AP2/ERF domain
CDDcd000182.33E-30125184No hitNo description
SMARTSM003801.3E-35126190IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-22126185IPR016177DNA-binding domain
PfamPF008472.1E-12126176IPR001471AP2/ERF domain
PROSITE profilePS5103224.223126184IPR001471AP2/ERF domain
PRINTSPR003672.4E-13127138IPR001471AP2/ERF domain
PRINTSPR003672.4E-13166186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSHKNPSPCP VLLLYKLTQL TRSLHFSSIL INMSNMTTLE EESSILEFIR QFLLGDFTSL  60
DDPNLSFLQP MESEFPVIKS EPDSPTFCEI IKPEPLDITC LGSSNWTESP QKRSEPKLAD  120
TEERKHYRGV RRRPWGKYAA EIRDPARKGS RVWLGTFDSD VDAAKAYDSA AFRMRGRKAI  180
LNFPLEAGAD SPPAKNSRKR RREKTLDLQE STISII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-29125189468ATERF1
3gcc_A1e-29125189468ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197201RKRRR
2197203RKRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.195970.0abscission zone| vegetative tissue
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM9060746e-65AM906074.1 Citrus medica mRNA for ethylene-responsive element binding protein (erebp gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421533.11e-159ethylene-responsive transcription factor ERF107
SwissprotQ9LY053e-41EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A2H5Q6K21e-157A0A2H5Q6K2_CITUN; Uncharacterized protein
TrEMBLV4RKU41e-157V4RKU4_9ROSI; Uncharacterized protein
STRINGXP_006421533.11e-158(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.16e-44ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]