PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006427m
Common NameCICLE_v10006427mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 108aa    MW: 12509.1 Da    PI: 9.2743
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006427mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.1e-161558144
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     k+ien+  r +tfskRr gi KKA+EL +L++ae+ ++ +s+ +
  Ciclev10006427m 15 KKIENEDDRMITFSKRRSGIHKKASELVTLTGAEIGIVRISELN 58
                     68************************************999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.42E-19762IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-14766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.451762IPR002100Transcription factor, MADS-box
CDDcd001201.44E-20852No hitNo description
PRINTSPR004043.0E-13929IPR002100Transcription factor, MADS-box
PfamPF003197.8E-171656IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MVSPKTRGRQ KIEIKKIENE DDRMITFSKR RSGIHKKASE LVTLTGAEIG IVRISELNQQ  60
HNELLCWLDE ENAREKILNQ NRKGKETQPH WWETPVDENE GKGFRGQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421344.21e-47agamous-like MADS-box protein AGL61
TrEMBLV4RKD23e-72V4RKD2_9ROSI; Uncharacterized protein
STRINGXP_006421353.15e-73(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-16M-type_MADS family protein