PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006439m
Common NameCICLE_v10006439mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21484.5 Da    PI: 9.8804
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006439mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.66e-171563149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ie++  r +tfskRr gi KKA EL +L++ e+a+++fs++gk + +
  Ciclev10006439m 15 KKIESEDGRLITFSKRRSGIYKKARELVTLTGSEIAILVFSQSGKHFSF 63
                     689*****************************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-25766IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-23781IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.745767IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-17929IPR002100Transcription factor, MADS-box
PfamPF003193.3E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MADKKTKGRQ KIEMKKIESE DGRLITFSKR RSGIYKKARE LVTLTGSEIA ILVFSQSGKH  60
FSFGHPSIEA VANRFVGLNN PANDNTHPLV EAHRQVRINE LNQQHNELLR QLEEEKEREK  120
VLKQMRRGKE TQPRWCETSV DELNHQELLQ MDATIDNLYK TFLAKLDEKT AAASSSMAPP  180
MYFHHK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421329.11e-138agamous-like MADS-box protein AGL62
TrEMBLV4U5R81e-137V4U5R8_9ROSI; Uncharacterized protein
STRINGXP_006421329.11e-137(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.14e-30AGAMOUS-like 57