PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006455m
Common NameCICLE_v10006455mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 294aa    MW: 32834.2 Da    PI: 8.4552
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006455mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     rg W++eEd +l++++k++G gtW+  ++  g + R++k+c++rw +yl
  Ciclev10006455m 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGiL-RSGKSCRLRWMNYL 63
                     899*****************************55.************97 PP
2Myb_DNA-binding391.8e-1269112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++ +eE   +++++ ++G++ W++Ia++++ gRt++++k+ w++
  Ciclev10006455m  69 RGPFAPEEVATIIQLHGLFGNK-WAAIASHLP-GRTDNDIKNLWNT 112
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0471167IPR017930Myb domain
SuperFamilySSF466897.11E-2914110IPR009057Homeodomain-like
SMARTSM007172.9E-141565IPR001005SANT/Myb domain
PfamPF002492.6E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-231870IPR009057Homeodomain-like
CDDcd001675.64E-121963No hitNo description
SMARTSM007178.8E-1268116IPR001005SANT/Myb domain
PROSITE profilePS5129418.12168118IPR017930Myb domain
PfamPF002498.7E-1269112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2571118IPR009057Homeodomain-like
CDDcd001671.23E-871114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGKRKTPFCD MEKMKRGVWS PEEDAKLIQY IKEHGHGTWR HLPKQAGILR SGKSCRLRWM  60
NYLRPDIKRG PFAPEEVATI IQLHGLFGNK WAAIASHLPG RTDNDIKNLW NTRLKKHLQS  120
MNHNLLTYQS PSSWGPSTVK SDFPSTRQMV KCASARVEAE APLSIQSSSL LNSPLVDKPY  180
SDIYLGLWNS IVGGSFRKTA RKSGGLSENA ISQTSLQMKL EPGSIVEDQA KANRTSASSD  240
TAPEQDDSYK PKVDMMAVSD SIGSNEFTDS SDTALKLLLD FPDDDGMEFL DEQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23161207110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421907.20.0transcription factor MYB41
TrEMBLV4S4970.0V4S497_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006421907.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2750133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-79myb domain protein 17