PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006469m
Common NameCICLE_v10006914mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 204aa    MW: 24071.9 Da    PI: 8.7023
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006469mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161357147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Ciclev10006469m 13 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 57
                     7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.46E-17267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-24361IPR009057Homeodomain-like
PROSITE profilePS5129424.058862IPR017930Myb domain
SMARTSM007171.4E-141260IPR001005SANT/Myb domain
PfamPF002497.1E-141357IPR001005SANT/Myb domain
CDDcd001678.61E-111758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
LRWVNYLRPD LKRGQITPHE ESIILELHAR WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  60
KAKISSDNTD KAKNRLLKRQ QFHQQQQHQH QHQHQQQDMQ LNQLDLKRIM FLLDESEHRV  120
PYIPQAPRPE FMGYHPNTIT DQDQQANNFF YNWMPNGNNN SAIMTEPSNE EILWDGLWNL  180
DDFGAAACAT SKASFHNLVA PFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1326248108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420399.21e-153transcription factor MYB120
TrEMBLA0A067EXV51e-150A0A067EXV5_CITSI; Uncharacterized protein
TrEMBLA0A2H5P2I91e-150A0A2H5P2I9_CITUN; Uncharacterized protein
TrEMBLV4S9P51e-150V4S9P5_9ROSI; Uncharacterized protein
TrEMBLV4U3651e-151V4U365_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006420399.11e-152(Citrus clementina)
STRINGXP_006420401.11e-151(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-57myb domain protein 305