PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006530m
Common NameCICLE_v10006530mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20063 Da    PI: 10.6139
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006530mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.95.3e-181561147
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     krien+  r +tfskRr gi KKA+EL +L++ e+a+++fs++gk +
  Ciclev10006530m 15 KRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPF 61
                     79******************************************855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.137767IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-27766IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-24881IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-18929IPR002100Transcription factor, MADS-box
PfamPF003195.3E-211663IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAAKKTKGRQ KIQMKRIENE DGRLITFSKR RSGIYKKASE LVTLTGSEIA ILVFSQSGKP  60
FSFGHPSIEA VANRFMGLNQ PVNDNTHPLV EAHRQLLRQL DEEKEREKVL KQMRRGKETQ  120
PRWWETPVNE LNHQELLQMD ATIDNLHKTF LARLNEKTAA ASSSMAPPMY FHHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hbx_A9e-14363666SERUM RESPONSE FACTOR
1hbx_B9e-14363666SERUM RESPONSE FACTOR
1hbx_D9e-14363666SERUM RESPONSE FACTOR
1hbx_E9e-14363666SERUM RESPONSE FACTOR
1srs_A9e-14363666PROTEIN (SERUM RESPONSE FACTOR (SRF))
1srs_B9e-14363666PROTEIN (SERUM RESPONSE FACTOR (SRF))
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492961.11e-120agamous-like MADS-box protein AGL62
TrEMBLV4RKB41e-127V4RKB4_9ROSI; Uncharacterized protein
STRINGXP_006421333.11e-127(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-37AGAMOUS-like 61