PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006534m
Common NameCICLE_v10006534mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 431aa    MW: 48492.9 Da    PI: 6.4029
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006534mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.65.4e-80554261374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn....sseelaalkl...fse 86 
                      lv+lLl  Ae + s+++ +a+ +L ++ + +s +g+p+qRl++yf +AL++r + ++ ++ ++  +++e         ++  ++a ++    ++
  Ciclev10006534m  55 LVHLLLLSAEKIGSQQFDRASIFLDHVDKYSSTTGNPVQRLVHYFSKALRERFNLETGRITSKGlKSEEVM--LllhpEEVMASAKQAliaCYQ 146
                      689**************************************************995555554441444433..134443333333333445899 PP

             GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                        P+++++ ++  qa+ e v++++++HiiD+    G + pa++qaLa+R++ pp  l+iT v+  +++sk++ ee+++rLa+fAe++++pf fn
  Ciclev10006534m 147 KVPFYQVTVFAGIQAVIENVSSAKTIHIIDLATRTGSHCPAIMQALATRQGCPPeLLKITMVVG-TTSSKQKFEEIENRLANFAETINLPFPFN 239
                      9*************************************************8888689****999.667************************** PP

             GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                      +         +++++++++gE++aV + ++l ++ +++ +le     +L  +++++P v+vv+e e++ n ++F +rf+ +l ++ alfd+le+
  Ciclev10006534m 240 I-----SFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLET----FLTELRKINPCVMVVIEVESNDNLQTFEDRFFGTLFHFGALFDCLEV 324
                      9.....234567999********************99999998....*********************************************** PP

             GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                       + r + +r++ E+++ g++i+n++a eg+er+  h +   Wr+ ++++G+ +++ls+    qa+l+lr ++ +   +++ + ++l++gWk+ p
  Ciclev10006534m 325 CMNRCHANRMTFEEMYAGQHIRNIIASEGEERIFGHMKIDGWRDLFNRFGLVEAELSSWSLFQAELILRSFAcGSSCTIDRNGECLIIGWKGIP 418
                      ************************************************************************9999****************** PP

             GRAS 367 LvsvSaWr 374
                       +s+S+W+
  Ciclev10006534m 419 HLSLSVWK 426
                      *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.73929405IPR005202Transcription factor GRAS
PfamPF035141.9E-7755426IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAGLGELSLV DIIRAAITRY LQFSLHGRPD LFCLDHFCGN SPTGFPEGGI KGVELVHLLL  60
LSAEKIGSQQ FDRASIFLDH VDKYSSTTGN PVQRLVHYFS KALRERFNLE TGRITSKGLK  120
SEEVMLLLHP EEVMASAKQA LIACYQKVPF YQVTVFAGIQ AVIENVSSAK TIHIIDLATR  180
TGSHCPAIMQ ALATRQGCPP ELLKITMVVG TTSSKQKFEE IENRLANFAE TINLPFPFNI  240
SFLTDIKDFE TNEGEVVAVY SPVHLSHMIR KPNCLETFLT ELRKINPCVM VVIEVESNDN  300
LQTFEDRFFG TLFHFGALFD CLEVCMNRCH ANRMTFEEMY AGQHIRNIIA SEGEERIFGH  360
MKIDGWRDLF NRFGLVEAEL SSWSLFQAEL ILRSFACGSS CTIDRNGECL IIGWKGIPHL  420
SLSVWKFHRE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-29604268375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419401.10.0DELLA protein RGL2
TrEMBLA0A2H5N7E20.0A0A2H5N7E2_CITUN; Uncharacterized protein
TrEMBLV4S6Z30.0V4S6Z3_9ROSI; Uncharacterized protein
STRINGXP_006419401.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2004936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-51RGA-like 2