PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006536m
Common NameCICLE_v10006536mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 231aa    MW: 25782.2 Da    PI: 6.2346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006536mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-1860110256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr ++ +g+Wv+eIr p++   + r++lg+f tae+Aa+a++ a+++++g+
  Ciclev10006536m  60 TYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGSFPTAEMAARAHDVAALAIKGH 110
                      69****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1260110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-3260118IPR001471AP2/ERF domain
SMARTSM003801.1E-3760123IPR001471AP2/ERF domain
PROSITE profilePS5103222.860117IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2160118IPR016177DNA-binding domain
PRINTSPR003672.9E-106172IPR001471AP2/ERF domain
CDDcd000181.25E-3161119No hitNo description
PRINTSPR003672.9E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDTDDKNFSS YSPSSTPTSK KSSKSQQANK EFMSPTIDNE NESNKKICNN GANALNKYPT  60
YRGVRMRSWG KWVSEIRQPR KKSRIWLGSF PTAEMAARAH DVAALAIKGH SAHLNFPELA  120
DELPRPASAA PKDIQAAAAK AAAAAIFDSP RRIEANNDTQ STCHDENKNS ADHHDHSSSD  180
DRDSAWFDHL PDLSLEGDDG KNRFCDSSWW QQAEFGHMGF QFEEILCWDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1649117372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044118.11e-137ethylene-responsive transcription factor ERF039
TrEMBLV4U6H91e-171V4U6H9_9ROSI; Uncharacterized protein
STRINGXP_006421614.11e-171(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-40ERF family protein