PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006546m
Common NameCICLE_v10006546mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 95aa    MW: 10904.5 Da    PI: 10.2953
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006546mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.31.9e-081438125
                     S---SHHHHHHHHHHHHHHHHHHHH CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAe 25
                     k+ien+  r +tfs Rr gi KKA 
  Ciclev10006546m 14 KKIENEDDRMITFSERRSGIYKKAP 38
                     78**********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-7657IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.185643IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-8828IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-15877IPR002100Transcription factor, MADS-box
PfamPF003192.5E-81554IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-82843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MAPKSFEKLK VEIKKIENED DRMITFSERR SGIYKKAPRF AIMVVSPSGE PYSFGHPSIE  60
AVANRFLGLN QPPIDNNHPL AEARRQLPSF QYNKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421336.19e-33agamous-like MADS-box protein AGL62
TrEMBLV4U5V03e-63V4U5V0_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006421359.15e-64(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.14e-17AGAMOUS-like 64