PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006586m
Common NameCICLE_v10006586mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 631aa    MW: 69408.3 Da    PI: 7.2631
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006586mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.81.2e-23168221155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k +++Wt+ LH+rF++a++++   ekA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Ciclev10006586m 168 KVKVVWTNSLHNRFLQAIRHI-TLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 221
                      5689*****************.9*******************************6 PP
2Response_reg78.62.1e-26111191109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                      vl+vdD+ + + ++  +l++ +y +v +++ + +al++++ ++ +Dl+++D+ mp+m+Glel kei+ee  +lp++v+++ + e+ + + l  G
  Ciclev10006586m  11 VLVVDDDSTSLAIVSAVLKHWDY-DVVTVKRPVDALAMIRIHQdIDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASG 103
                      89*********************.***************87777************************************************** PP

                      ESEEEESS--HHHHHH CS
     Response_reg  94 akdflsKpfdpeelvk 109
                      a  + +Kp++p++l++
  Ciclev10006586m 104 AVFYMVKPVNPDALRN 119
                      *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004483.2E-289121IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521729.82E-339126IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-349153No hitNo description
PROSITE profilePS5011041.09610125IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.3E-2311119IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.43E-2912124No hitNo description
PROSITE profilePS5129410.091165224IPR017930Myb domain
SuperFamilySSF466891.29E-17166225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-24166225IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24168221IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MAKPSFLRFN VLVVDDDSTS LAIVSAVLKH WDYDVVTVKR PVDALAMIRI HQDIDLVITD  60
LHMPEMNGLE LQKEINEEFI HLPVMVMSSD DRESVIMKSL ASGAVFYMVK PVNPDALRNV  120
WQYAVTSKKG KSIFIEEKKK ESKTNSKRKA SKRRKDELEG ENAAAPKKVK VVWTNSLHNR  180
FLQAIRHITL EKAVPKKILE FMNVPGLTRE NVASHLQKYR IFLKRVAENG INAALKNFNH  240
RSSLASGRTS MMLQEVQDYA QAIEKQLQMR TSPFIPRYGR GISELNGNTS FGSIGLQSHN  300
SLSHMGLLGV QDNFHQPFFG NTTYPLYQAN PGTTFGTGLI DMGTNSFSCG GLSGGLLNGS  360
NSNQIFRQKS KLRPDPYDNN TGASSLKGFG ASGLEKMWTI KNNPYLNYAG MRLKNDGDQL  420
VGAGEVGLNV KGDAGAGNEG PTFHHLPPGY SSSSAGFAVG NELEHTSVLP PLSLSQQQYG  480
LGKKVENDFT FGLMNTVNAS VNDDTARPEQ LGEGADFGDL LFDLSDFQFL FQQQGDGEGA  540
LNPNIGSGSG SHQPELNRPI NQSQNPVLPS AFADNASVII NAKILCSDSS MQKYCAQIQD  600
IQEVMNLDLG NSNAKPLNDY YPRLDQNPNN Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21165227264ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137154KKKESKTNSKRKASKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044401.10.0uncharacterized protein LOC18033187
TrEMBLV4U7590.0V4U759_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006421849.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.17e-50response regulator 2