PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006587m
Common NameCICLE_v10006587mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17708 Da    PI: 6.513
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006587mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.25.8e-101302049
                     HHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyey 49
                     i KKA EL +L++ e+av++fs++gk y++
  Ciclev10006587m  1 IYKKATELVTLTGSEIAVVVFSQSGKPYTF 30
                     78***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.563134IPR002100Transcription factor, MADS-box
PfamPF003197.9E-11130IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-11149IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
IYKKATELVT LTGSEIAVVV FSQSGKPYTF GHPSVEAVAN RFLGMNQLPN DNIHSLVVGH  60
RQVSINELNQ QHNELRRQLD EEKEQEKMLT QMRRGKETQP RWWETPIDEH NLQELLQMDS  120
AVDDLHQIFL AKLNERAAAA AVSSPVAPSL YFHHK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492960.12e-82agamous-like MADS-box protein AGL62
RefseqXP_006492962.12e-82agamous-like MADS-box protein AGL62
RefseqXP_006492963.12e-82agamous-like MADS-box protein AGL62
TrEMBLV4S2P31e-112V4S2P3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006421337.11e-112(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-25AGAMOUS-like 61