PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006625m
Common NameCICLE_v10006625mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 191aa    MW: 22236.9 Da    PI: 10.5036
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006625mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.36.2e-23541772128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      p Gf F P+dee+++ yLk+k+ +++l+l+   i++++iy + P+dL   +k  +++ +yfF+  +  y+ g+ ++        ++ g++++++
  Ciclev10006625m  54 PLGFSFCPSDEEMLTIYLKNKLLNRPLSLNANaINSLNIYMYGPHDLSVIFKRpGQTTMYFFTYPRL-YEIGSSAHN-------QNAGSSEKIY 139
                      89************************8886656**************96555536668899988755.666655555.......3578889998 PP

              NAM  94 sk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                       + +++l g kktLvfy+g  ++ +++kt+W+++ey++
  Ciclev10006625m 140 GSkSKTLLGYKKTLVFYQGklHQVNSRKTSWIIEEYKI 177
                      87456679*********8855788899*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-2348180IPR003441NAC domain
PROSITE profilePS5100525.39453190IPR003441NAC domain
PfamPF023653.0E-1454177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDMDRQMMMM RRMMNMAMDQ PMTRRNLNTI PLRRNLNRRR PPIIRRNLNS NVIPLGFSFC  60
PSDEEMLTIY LKNKLLNRPL SLNANAINSL NIYMYGPHDL SVIFKRPGQT TMYFFTYPRL  120
YEIGSSAHNQ NAGSSEKIYG SKSKTLLGYK KTLVFYQGKL HQVNSRKTSW IIEEYKIGLN  180
IIQSESDDPI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4U6341e-137V4U634_9ROSI; Uncharacterized protein
STRINGXP_006421439.11e-138(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2396824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.18e-13NAC family protein