PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006714m
Common NameCICLE_v10006714mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 205aa    MW: 23397.6 Da    PI: 10.198
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006714mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-1372118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++WT++E+++++ + k lG+g+Wk I++ + ++Rt  q+ s+ qky
  Ciclev10006714m  72 KLPWTEDEHQKFLMGLKWLGKGDWKGISKNFVTTRTQTQIASHAQKY 118
                      689*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.14967123IPR017930Myb domain
SuperFamilySSF466897.9E-1768123IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1770122IPR006447Myb domain, plants
SMARTSM007171.7E-871121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-1172120IPR009057Homeodomain-like
PfamPF002497.3E-1173118IPR001005SANT/Myb domain
CDDcd001679.58E-774119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MCRSKGCVKL FGVNILEQKQ DHESNRSSSV TSFANLHYLE ERNVQVNAES LCEGQQLNFK  60
RRKVVREKRK RKLPWTEDEH QKFLMGLKWL GKGDWKGISK NFVTTRTQTQ IASHAQKYFN  120
RQASSSDNKN RRTSLFDMPL KEAYQIHCNG RMPAGICDNF SPCAPQLFQR SISRETDILE  180
LKIGPPQSPE MNSSSSQIFG VAVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15970KRRKVVREKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389419.11e-126transcription factor MYBS2-like
TrEMBLV4SCS31e-152V4SCS3_9ROSI; Uncharacterized protein
STRINGXP_006421516.11e-153(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3278922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-18MYB_related family protein