PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006751m
Common NameCICLE_v10006751mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 213aa    MW: 23730.3 Da    PI: 6.6773
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006751mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000183254123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H++ H
  Ciclev10006751m 32 YECTFCKRGFTNAQALGGHMNIH 54
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-52658IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.29E-72958No hitNo description
SMARTSM003550.00973254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4683259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDSSQKQVGS DHSSSDENEV KELDTSSAKR SYECTFCKRG FTNAQALGGH MNIHRKDRAK  60
AKQTTGPSFI TSNPMLIHED YMNPRYIAPI SSDTSRHSPV FESQRNYLRY YQPSASNPRN  120
PPAYNVPRSE SLSMMNEDQL LGANLSLGIG PSCVDEDNEV MRRGTVEEAG LDLELRLGRN  180
SFNKEEISGL AFERGRVNPR LLGDVLTFFS KS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024047547.11e-133transcriptional regulator SUPERMAN
TrEMBLV4U2C21e-156V4U2C2_9ROSI; Uncharacterized protein
STRINGXP_006420139.11e-157(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-15C2H2 family protein