PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006766m
Common NameCICLE_v10006766mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 438aa    MW: 49818.5 Da    PI: 8.4083
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006766mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.41.1e-85554241374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsP 89 
                      lv+lL+ cAe + s+++ +a++lL + ++ +s+ g++++R+++yf++AL++r +r +++ ++k ++ +e +  + +e++ +l+      ++ s 
  Ciclev10006766m  55 LVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNReTGKITSKRVKGEEIKLLQPEETILSLRPalvaCYKESS 148
                      689****************************************************444555555666666655555555555434556566677 PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      +++ + ++  qaI e v++++r+H iD+ i  G + + L+qaLa+R+e p   l+iT+vgs   +sk+++eetg+rLa fAe+ ++pf+f++++
  Ciclev10006766m 149 FYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCMVLMQALATRQECPVkLLKITAVGS---SSKQRMEETGKRLAYFAETWNLPFSFKIVM 239
                      9999*******************************************7665499*******...58**************************** PP

             GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                      +++++dl+ ++++++ gEa+aV + + l r+         + d ++k+++++sP v+v++e ea+hns++F +rf+e l +ysa fd+l+++++
  Ciclev10006766m 240 VTETKDLNEDKFDLNAGEAVAVYSPILLSRTR--------HPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMA 325
                      **************************888886........457899************************************************ PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                      r + er++ E+++lg++i+n++a+eg+er+ rh +   Wr+ ++++G+ +++ls++   qa+l++++++     +++ + ++l+ gWk+ p +s
  Ciclev10006766m 326 RCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAfASYLTLDRNGQCLIVGWKGSPQLS 419
                      *********************************************************************555568888899999********** PP

             GRAS 370 vSaWr 374
                      +S+W+
  Ciclev10006766m 420 LSVWK 424
                      ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.829403IPR005202Transcription factor GRAS
PfamPF035143.7E-8355424IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAGFRELSTV DVIRAATAIY LQSSSHSSSN LSLLYHFCGG SAINISEEES KDVELVHLLI  60
LCAEKIGSQQ FDRASTLLDH CENFSSKIGN SVERVVHYFV KALQERFNRE TGKITSKRVK  120
GEEIKLLQPE ETILSLRPAL VACYKESSFY QATLFAGTQA IIERVASAKR IHLIDLAIRS  180
GSHCMVLMQA LATRQECPVK LLKITAVGSS SKQRMEETGK RLAYFAETWN LPFSFKIVMV  240
TETKDLNEDK FDLNAGEAVA VYSPILLSRT RHPDFLIKML RKISPCVMVI IEVEANHNSQ  300
NFEDRFFEVL FHYSASFDCL KVSMARCDPE RVTFEEMYLG QHIRNIIATE GEERIFRHMK  360
IDAWRKFFHR FGMVEAELST SSLFQAELVI KNFAFASYLT LDRNGQCLIV GWKGSPQLSL  420
SVWKFHQNKR RTALRIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-366242326378Protein SCARECROW
5b3h_A5e-366242325377Protein SCARECROW
5b3h_D5e-366242325377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419399.20.0DELLA protein RGL2
RefseqXP_006488992.10.0DELLA protein RGL2-like
TrEMBLV4U0870.0V4U087_9ROSI; Uncharacterized protein
STRINGXP_006419399.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2004936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-54RGA-like 1