PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006784m
Common NameCICLE_v10006784mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 153aa    MW: 17600.5 Da    PI: 9.289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006784mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-202273256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr+++ +g+++AeIrdps +g  +r +lg+f taeeAa+a+++a+ +++g+
  Ciclev10006784m 22 RYRGVRRRP-WGKFAAEIRDPSRQG--ARLWLGTFETAEEAARAYDRAAFNMRGH 73
                     6********.**********96543..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-322282IPR001471AP2/ERF domain
PfamPF008472.0E-152273IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-232281IPR016177DNA-binding domain
SMARTSM003806.4E-382286IPR001471AP2/ERF domain
PROSITE profilePS5103224.8952280IPR001471AP2/ERF domain
PRINTSPR003671.2E-112334IPR001471AP2/ERF domain
CDDcd000184.09E-292381No hitNo description
PRINTSPR003671.2E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEKPSKGKER QEKEEKRREE VRYRGVRRRP WGKFAAEIRD PSRQGARLWL GTFETAEEAA  60
RAYDRAAFNM RGHLAILNFP NEYYSQVMGY AGPHRLSSSS SSSSVSSERF EKGGSSSSGQ  120
SQRQVIELEY LDDKVLEEML ESEDEKKERK KD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-321913511114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420202.11e-106ethylene-responsive transcription factor ERF098
SwissprotQ9LTC59e-52ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A067ER721e-105A0A067ER72_CITSI; Uncharacterized protein
TrEMBLA0A2H5PJM71e-105A0A2H5PJM7_CITUN; Uncharacterized protein
TrEMBLV4RZU11e-105V4RZU1_9ROSI; Uncharacterized protein
STRINGXP_006420202.11e-106(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]