PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006803m
Common NameCICLE_v10006740mg, CICLE_v10006803mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 88aa    MW: 9536.05 Da    PI: 10.2696
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006803mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF534.3e-17250149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ienk  r +t+skRr gi KKA+EL +L+ +e+ +++ s +gk y +
  Ciclev10006803m  2 KKIENKDDRMITLSKRRSGIYKKASELVTLTSTEIGIVVSSLSGKPYSF 50
                     78******************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-13153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.077154IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-18170IPR002100Transcription factor, MADS-box
PfamPF003194.8E-19350IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-71631IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-73152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MKKIENKDDR MITLSKRRSG IYKKASELVT LTSTEIGIVV SSLSGKPYSF GHPSIEAVVN  60
RILGLTQPPN DNSHPLAKAQ CQLLSVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389347.11e-42cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7-like
TrEMBLA0A2H5QV395e-57A0A2H5QV39_CITUN; Uncharacterized protein
TrEMBLV4S2Q65e-57V4S2Q6_9ROSI; Uncharacterized protein
STRINGXP_006421345.18e-58(Citrus clementina)
STRINGXP_006421352.18e-58(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-21AGAMOUS-like 61