PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006861m
Common NameCICLE_v10006861mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 343aa    MW: 37389.7 Da    PI: 4.6187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006861mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-1754102355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  Ciclev10006861m  54 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 102
                      56******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.7E-3253116IPR001471AP2/ERF domain
CDDcd000184.07E-2953109No hitNo description
PROSITE profilePS5103220.48153110IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2054110IPR016177DNA-binding domain
PRINTSPR003672.3E-75465IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-2854109IPR001471AP2/ERF domain
PfamPF008477.1E-1156102IPR001471AP2/ERF domain
PRINTSPR003672.3E-77692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSSSTSKTLD KPFQGYDEQG QAQMGFALIQ RNPNSTSPSS EKRGRRKQPE PGRFLGVRRR  60
PWGRYAAEIR DPTTKERHWL GTFDTAHEAA LAYDRAALSM KGAQARTNFI YTDNGTFHSL  120
LTPFDIQALL PPPPQSSQFT VQNSTSAPPQ QLQPDISENN TTSKITITSN NETSTNETSY  180
GSSLDDTGFF FSEPDNSNSG YLGCIVPDSC LNPPSNHQAN SNSGASNDQK SFCSIMDTTS  240
TVLPTEPYMA GDFSYFGEFN DGFWDDRQQS WEMNELSSMI NNPIMAEDGC SMGALSDPAV  300
IDHHYHNPSH GIVPQATSSS SASSSSTPLF GGTVVDFGYS LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1944109571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419654.10.0ethylene-responsive transcription factor ERF086
TrEMBLV4U0W10.0V4U0W1_9ROSI; Uncharacterized protein
STRINGXP_006419654.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-51ERF family protein