PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006875m
Common NameCICLE_v10006875mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 267aa    MW: 29878.3 Da    PI: 6.1594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006875mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS35.81.2e-1121717197
             GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                       cAe + s+++  a+ lL   ++ +s++g++++Rl+++f +A+++      +e+             s +   al + +  +P++++++ +  q
  Ciclev10006875m   2 VCAEKIGSQQFDHASILLDDFENFSSKAGNAVERLVHHFSKAIQESCCIPEEEIL------------SLKP--ALIACYLEFPFYQVTQYAGMQ 81 
                      6******************************************998876222222............2222..222334458************ PP

             GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                      aI e v++++rv  i + ++  +      q La+R+e p   l+ T+v     +sk+++eetg+  a fAe+l++pf+ ++  a+++ dl+   
  Ciclev10006875m  82 AIAENVASAKRV--ISLTLQSEVEH---TQPLATRQECPLeLLKATAVRT---TSKQKVEETGKMFAYFAETLNLPFSSKIAFATETRDLRKGI 167
                      **********96..77776666655...69******7665499******9...68***********************9997777888877665 PP

             GRAS 194 Lrvk 197
                      ++++
  Ciclev10006875m 168 FELN 171
                      5555 PP
2GRAS23.46.7e-08161204232275
             GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      ++l+  ++ +   ea+hn ++F +rf+eal +ys+ +d+lea +
  Ciclev10006875m 161 RDLRKGIFELNTVEANHNLSTFEDRFFEALFHYSSALDCLEACM 204
                      6777778888899***************************8754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.1121266IPR005202Transcription factor GRAS
PfamPF035144.1E-92171IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVCAEKIGSQ QFDHASILLD DFENFSSKAG NAVERLVHHF SKAIQESCCI PEEEILSLKP  60
ALIACYLEFP FYQVTQYAGM QAIAENVASA KRVISLTLQS EVEHTQPLAT RQECPLELLK  120
ATAVRTTSKQ KVEETGKMFA YFAETLNLPF SSKIAFATET RDLRKGIFEL NTVEANHNLS  180
TFEDRFFEAL FHYSSALDCL EACMVPCDPK WLTFKEITSS IFQAELLLKN FSCASSCTIG  240
RNGKCLIIGW KGSPHPSLSV RKFQQY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419399.21e-76DELLA protein RGL2
RefseqXP_006488992.12e-76DELLA protein RGL2-like
TrEMBLV4S1S00.0V4S1S0_9ROSI; Uncharacterized protein
STRINGXP_006419400.10.0(Citrus clementina)