PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006914m
Common NameCICLE_v10006914mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 261aa    MW: 30625.5 Da    PI: 9.3938
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006914mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  Ciclev10006914m 17 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 64
                     79********************************************97 PP
2Myb_DNA-binding51.81.8e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Ciclev10006914m  70 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0741268IPR017930Myb domain
SuperFamilySSF466891.94E-3014111IPR009057Homeodomain-like
SMARTSM007176.5E-171666IPR001005SANT/Myb domain
PfamPF002497.3E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-241871IPR009057Homeodomain-like
CDDcd001673.10E-121964No hitNo description
SMARTSM007171.4E-1469117IPR001005SANT/Myb domain
PROSITE profilePS5129419.3569119IPR017930Myb domain
PfamPF002491.1E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2472118IPR009057Homeodomain-like
CDDcd001675.05E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMGAQMGWGI IDEGWRKGPW TAEEDRLLIE YVRLHGEGRW NSVARLAGLR RNGKSCRLRW  60
VNYLRPDLKR GQITPHEESI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAK  120
ISSDNTDKAK NRLLKRQQFH QQQQHQHQHQ HQQQDMQLNQ LDLKRIMFLL DESEHRVPYI  180
PQAPRPEFMG YHPNTITDQD QQANNFFYNW MPNGNNNSAI MTEPSNEEIL WDGLWNLDDF  240
GAAACATSKA SFHNLVAPFC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420401.20.0transcription factor MYB2
TrEMBLV4S9P50.0V4S9P5_9ROSI; Uncharacterized protein
STRINGXP_006420401.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-92myb domain protein 305