PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10006958m

Common Name

CICLE_v10006958mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 93aa MW: 10224.7 Da PI: 9.9815

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10006958m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58	1.2e-18	17	63	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien+ r +tfskRr gi KKA+EL +L++ae+ +++fs++gk + Ciclev10006958m 17 KKIENEDDRMITFSKRRSGIHKKASELVTLTGAEIGIVVFSPSGKPF 63 78******************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.278	9	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.9E-28	9	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.16E-25	10	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-19	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-23	18	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-19	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-19	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MVQGPCKTRG RQKIEIKKIE NEDDRMITFS KRRSGIHKKA SELVTLTGAE IGIVVFSPSG 60 KPFSFGHPSL EAVANQEHPN DNTHLLVELT AR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269\|PubMed:18713950}.
Uniprot	TISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015389346.1	3e-54	polygalacturonase-like
Swissprot	Q4PSU4	5e-26	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	V4SC85	1e-61	V4SC85_9ROSI; Uncharacterized protein
STRING	XP_006421346.1	2e-62	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-28	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Ciclev10006958m
Entrez Gene	18032960

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]