PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006985m
Common NameCICLE_v10006985mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 167aa    MW: 18792.8 Da    PI: 10.9006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006985mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.81.2e-24411632119
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkat.gkdke 91 
                      p Gf F P+deel++ yLk+k+ +k+  + +++ik+++iy + P+dL   +k  ++  +yfF+  +     ++ +nr a  +g+Wkat g++++
  Ciclev10006985m  41 PLGFSFCPNDEELLTVYLKNKLLNKPlPPDADAIKSLNIYMYGPQDLSVIFKRlGQPTMYFFTFLRLYGIGSSAQNRnAGINGFWKATpGSSEK 134
                      78************************5334477**************964444266699****9988777788999955569****88688999 PP

              NAM  92 vlsk.kgelvglkktLvfykgrapkgekt 119
                      ++ + +++  g kktLvfy+g++++++ t
  Ciclev10006985m 135 IYGSkSKTPLGYKKTLVFYRGKSHQANPT 163
                      998745666**********9988776544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-2337159IPR003441NAC domain
PROSITE profilePS5100526.02440166IPR003441NAC domain
PfamPF023654.0E-1441156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDRQTMMRRR KMNLNTIPLG RNLNRGRPPI VGRDLNSNPN PLGFSFCPND EELLTVYLKN  60
KLLNKPLPPD ADAIKSLNIY MYGPQDLSVI FKRLGQPTMY FFTFLRLYGI GSSAQNRNAG  120
INGFWKATPG SSEKIYGSKS KTPLGYKKTL VFYRGKSHQA NPTKTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611MRRRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4S7871e-118V4S787_9ROSI; Uncharacterized protein
STRINGXP_006421440.11e-118(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2396824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.14e-14NAC family protein