PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007015m
Common NameCICLE_v10007015mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 150aa    MW: 17480.9 Da    PI: 10.0178
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007015mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.12e-171863449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     e +  r +tfskRr gi KKA EL +L++ e+av++fs++gk y++
  Ciclev10007015m 18 EKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 63
                     5667899**************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.661767IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-20766IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-22982IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-15929IPR002100Transcription factor, MADS-box
PfamPF003194.9E-201863IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MAGKKTKWRK KIETKKNEKE DERLITFSKR RSGIYKKACE LVTLTGSEIA VVVFSQSGKP  60
YTFGHHSVEA VANRFLGMNQ LPNDNVHSLV VGHSQVRINE LNQQHNELRR QLDEEKEQEK  120
MLTQMRRGKE TQPRWWETPV DEHNLQELL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421334.11e-108agamous-like MADS-box protein AGL62
TrEMBLV4U5S31e-106V4U5S3_9ROSI; Uncharacterized protein
STRINGXP_006421334.11e-107(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-28AGAMOUS-like 61