PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007077m
Common NameCICLE_v10007077mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 201aa    MW: 22228.8 Da    PI: 10.2308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007077mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000223050323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C+ C+k Fs++  L  H++ H
  Ciclev10007077m 30 CNFCNKIFSTSQALGGHQNAH 50
                     ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-72555No hitNo description
Gene3DG3DSA:3.30.160.606.2E-52654IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5722855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGGTSNPQAN ESSSHESIRK KQPKQKGFLC NFCNKIFSTS QALGGHQNAH KQERALAKRR  60
KEMDMGALGH HHYPYYPYSS SAAHQNPNFY GSLFNRSSPL GVSMQPMIRK PSYPWVPLWD  120
RFGGHGKTVM NAQLAYDKMR LESVMEAQNG GVRAEFRNLN GSSMAAKRPN NDGGDRLKGN  180
SSSQSNQHDD DSGLDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421473.21e-150zinc finger protein 3
TrEMBLA0A067ETN71e-147A0A067ETN7_CITSI; Uncharacterized protein
TrEMBLV4RKQ21e-148V4RKQ2_9ROSI; Uncharacterized protein
STRINGXP_006421473.11e-148(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.16e-17C2H2 family protein