PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007090m
Common NameCICLE_v10007090mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 138aa    MW: 16081.4 Da    PI: 10.076
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007090mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.33.4e-071538124
                     S---SHHHHHHHHHHHHHHHHHHH CS
           SRF-TF  1 krienksnrqvtfskRrngilKKA 24
                     k+ien+  r +tfskR  gi KKA
  Ciclev10007090m 15 KKIENEDDRLITFSKRGSGIYKKA 38
                     68*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.386738IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-9839IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-6929IPR002100Transcription factor, MADS-box
PfamPF003192.5E-61638IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-62944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MAGKKTKRRQ KIEMKKIENE DDRLITFSKR GSGIYKKAIK AYSHARINEL NQQHNDLLRQ  60
LDEEKEQQNM LKQMRRVKET QPRWWETPVD ELNLQELLQM DSAVDDLHQT FLAKINEKTA  120
AAAASSSVAP PMYFHNK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492961.12e-62agamous-like MADS-box protein AGL62
TrEMBLV4U5S84e-97V4U5S8_9ROSI; Uncharacterized protein
STRINGXP_006421339.17e-98(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-13AGAMOUS-like 61