PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007104m
Common NameCICLE_v10007104mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21826.6 Da    PI: 8.9744
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007104mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF572.5e-181561147
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     k+ien+  r +tfskRr gi KKA+EL +L++ae+ +++fs++gk +
  Ciclev10007104m 15 KKIENEDDRMITFSKRRSGIYKKASELVTLTGAEIGIVVFSPSGKPF 61
                     68******************************************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.39767IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-28766IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-26892IPR002100Transcription factor, MADS-box
CDDcd002651.58E-31882No hitNo description
PRINTSPR004042.6E-18929IPR002100Transcription factor, MADS-box
PfamPF003193.1E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAAKKTRGRQ KIEMKKIENE DDRMITFSKR RSGIYKKASE LVTLTGAEIG IVVFSPSGKP  60
FSFGHPSLEA VANRFLGSSQ EHPNDNTHPL VEAHRRVRIN ELNQQHNELL RQVDEEKARE  120
KILKQNRKGR ETQPHWWETP VDELNHQELL QMDAAIDDLH KTFLAKLNEK TAAASSSIAL  180
PIKSDEATSP ND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043348.11e-132agamous-like MADS-box protein AGL61
TrEMBLV4RKC31e-140V4RKC3_9ROSI; Uncharacterized protein
STRINGXP_006421343.11e-140(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-44AGAMOUS-like 61