PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007109m
Common NameCICLE_v10007109mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 337aa    MW: 38467.5 Da    PI: 9.5581
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007109mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.63.3e-361262283135
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 
                      +k+drhski+T++g RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++ +aikel +++ + +                          
  Ciclev10007109m 126 VKRDRHSKICTAQGFRDRRVRLSIEIAREFFDLQDMLGFDKASQTLEWLFNKSRKAIKELIELKRPRN-------------------------- 193
                      69*************************************************************44444.......................... PP

              TCP  97 skksqksaasalnlakesrakarararertrekmriknk 135
                           +s++ + +l k+sr +ararar+rtr km++k  
  Ciclev10007109m 194 ----GTSKQLMEKLLKKSRDQARARARQRTRAKMFKKFA 228
                      ....566777899*********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.9E-34127193IPR005333Transcription factor, TCP
PROSITE profilePS5136935.023127185IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.427205222IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
VFVLENGIND AMYVNISMQK AHGPRRNLKV NLLVIVILVD RSQHSTSFNP NANIFSSNNY  60
LHCPPLFAGY ENNNVLLDPL TGWILPAANH QTLTNMAFTG NGSAVVNREH YDHPSSFIRN  120
EKPVLVKRDR HSKICTAQGF RDRRVRLSIE IAREFFDLQD MLGFDKASQT LEWLFNKSRK  180
AIKELIELKR PRNGTSKQLM EKLLKKSRDQ ARARARQRTR AKMFKKFADT TPQISTEIKA  240
CQESSSYVVS HDQVQEPCSS TLACQTQDNE APTDRNQNPS SNFAHDQQNL EISKDTISCN  300
TSNYNFNLPQ NWDIVSAMPH QYTVCRAITK HESLNW*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955808.10.0transcription factor CYCLOIDEA-like
TrEMBLV4RKK70.0V4RKK7_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006421408.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-33TCP family protein