PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007927m
Common NameCICLE_v10007927mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 546aa    MW: 60903.9 Da    PI: 5.5989
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007927mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.72.4e-1381755451374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elL +cA+a++++d+ +a++l+a+ ++++s +gdp+qRl ay++e+L arl++s+s++ykal+++e +   s+e l++++l++e++P++kf+
  Ciclev10007927m 175 LKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLSSSGSSIYKALRCKEPA---SAELLSYMHLLYEICPYFKFG 265
                      5799*****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea++ e+++HiiDf i qG QW+ L+ aLasRp+gpp++RiTg++++++   +   le +g+rL+k+A+  +vpfefn+ +a + 
  Ciclev10007927m 266 YMSANGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAyaRGGGLEIVGQRLSKLADLYKVPFEFNA-AAISG 358
                      *******************************************************888899999************************.8999* PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ++++le+L+v+pgEalaVn++++lh+++desvs++++rd++L+lvk+lsPkvv++veqea++n+++F++rfle++++y a+fds+++ lpr+s+
  Ciclev10007927m 359 SEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSK 452
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +ri+vE+++l+reivn++acegaer+erhe ++kWr+r+ +aGF+p+pls ++++++k+ll++++ d y++ee++g+l+lgWk++++++ SaWr
  Ciclev10007927m 453 DRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYN-DNYTLEERDGALFLGWKNQAIIVSSAWR 545
                      *****************************************************************.55*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.716149526IPR005202Transcription factor GRAS
PfamPF035148.2E-136175545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQFSRMHKMS DGTQKFYDQP VQKLASKNWP PHQNIDHQPS SDDSNERARL SVDTFEQYCT  60
LESSSGTGSH GAPNSPSTAS FSPEKTQVSW PNQQSYSSEL YQSPDHTCGS PVSGSCITQN  120
ENDLRHKLRE LETVMLGPDL DTPAMYNVTS PKEDQISSES ERWKCLVEII SRGDLKELLC  180
ACAKAIENND MYAAESLMAE SRQMVSVSGD PIQRLGAYML EGLIARLSSS GSSIYKALRC  240
KEPASAELLS YMHLLYEICP YFKFGYMSAN GAIAEAMKDE NKIHIIDFLI AQGSQWIILI  300
MALASRPGGP PHIRITGIDD STAAYARGGG LEIVGQRLSK LADLYKVPFE FNAAAISGSE  360
VQLENLEVRP GEALAVNFSM MLHHMPDESV SIQNHRDRLL RLVKGLSPKV VTLVEQEANT  420
NTAPFFHRFL ETMNHYGAIF DSIDVALPRD SKDRINVEQH CLAREIVNLI ACEGAERVER  480
HEPFGKWRSR FIMAGFTPYP LSPFVNATIK TLLENYNDNY TLEERDGALF LGWKNQAIIV  540
SSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6418254426378Protein SCARECROW
5b3h_A3e-6418254425377Protein SCARECROW
5b3h_D3e-6418254425377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4406470.0JF440647.1 Citrus medica var. sarcodactylis GRAS family transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033408.10.0scarecrow-like transcription factor PAT1 isoform X1
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLV4WGH90.0V4WGH9_9ROSI; Uncharacterized protein
STRINGXP_006452519.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]