PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007937m
Common NameCICLE_v10007937mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 543aa    MW: 60473.9 Da    PI: 6.6063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007937mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12365409554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + Er+RR+++N++f+ Lr+llP+      +K +Ka+ L  + eY++sL
  Ciclev10007937m 365 HMISERKRREKLNESFHALRSLLPPG-----TKKDKASLLINTREYLSSL 409
                      8899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.14E-11358413No hitNo description
PROSITE profilePS5088815.04360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16361429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13364426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9365409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-13366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDTAFQLEEA ARANFFQSVM QTFGCTYICL WSYSQQSNCL VFLDGWYHEE NNQPSSSSAS  60
LARRFFHDYC QSFVPIVDYG RLPGLAFKNG QQYIEVNAPE LQRLAFTESQ RQFYQTAVFM  120
ACKSGEIELG LCGGSQGNME MEMRSLFQED FKDQQSPAAA GGRPIQSSSS SSLRSLSMDS  180
PSEYSSLLFN IPTSSHLSET LIDVVPNLQP LTTTTTAAST STSISTTAGN TRTNTSLQQA  240
QQAMEAFAQL QNIQLPIIQE TEQDAMTRAI LAVLTSPTSS SSSSQQQQQQ QQQQEQPQQH  300
LAPPKASAFK NYNLVLAPTS NIRAISAFRG QSILKRTISY YRRLNIARRE YTAGPSRPTS  360
TQLHHMISER KRREKLNESF HALRSLLPPG TKKDKASLLI NTREYLSSLK AQVDELSRRN  420
QILEAQVLPK AREAAAAASV NAEERVQVRV SPVAESTSEW RMVDIRVIVR GECPALDLVI  480
RILEFLKGDD NLSLISVEAN TQIAADSTSF NHVILRLRIQ GNEWDESAFE EAVRRVVGDL  540
AH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373ERKRRE
2369374RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033942.10.0putative transcription factor bHLH041 isoform X3
TrEMBLV4UQK00.0V4UQK0_9ROSI; Uncharacterized protein
STRINGXP_006451491.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-78bHLH family protein