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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Ciclev10007943m |
| Common Name | CICLE_v10007927mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
GRAS |
| Protein Properties |
Length: 541aa MW: 60254.1 Da PI: 5.4726 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10007943m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 452.7 | 2.3e-138 | 170 | 540 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
l+elL +cA+a++++d+ +a++l+a+ ++++s +gdp+qRl ay++e+L arl++s+s++ykal+++e + s+e l++++l++e++P++kf+
Ciclev10007943m 170 LKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLSSSGSSIYKALRCKEPA---SAELLSYMHLLYEICPYFKFG 260
5799*****************************************************************9...9******************** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
++ aN aI ea++ e+++HiiDf i qG QW+ L+ aLasRp+gpp++RiTg++++++ + le +g+rL+k+A+ +vpfefn+ +a +
Ciclev10007943m 261 YMSANGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAyaRGGGLEIVGQRLSKLADLYKVPFEFNA-AAISG 353
*******************************************************888899999************************.8999* PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
++++le+L+v+pgEalaVn++++lh+++desvs++++rd++L+lvk+lsPkvv++veqea++n+++F++rfle++++y a+fds+++ lpr+s+
Ciclev10007943m 354 SEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSK 447
********************************************************************************************** PP
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ri+vE+++l+reivn++acegaer+erhe ++kWr+r+ +aGF+p+pls ++++++k+ll++++ d y++ee++g+l+lgWk++++++ SaWr
Ciclev10007943m 448 DRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYN-DNYTLEERDGALFLGWKNQAIIVSSAWR 540
*****************************************************************.55*************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 541 aa
Download sequence Send
to blast |
MHKMSDGTQK FYDQPVQKLA SKNWPPHQNI DHQPSSDDSN ERARLSVDTF EQYCTLESSS 60
GTGSHGAPNS PSTASFSPEK TQVSWPNQQS YSSELYQSPD HTCGSPVSGS CITQNENDLR 120
HKLRELETVM LGPDLDTPAM YNVTSPKEDQ ISSESERWKC LVEIISRGDL KELLCACAKA 180
IENNDMYAAE SLMAESRQMV SVSGDPIQRL GAYMLEGLIA RLSSSGSSIY KALRCKEPAS 240
AELLSYMHLL YEICPYFKFG YMSANGAIAE AMKDENKIHI IDFLIAQGSQ WIILIMALAS 300
RPGGPPHIRI TGIDDSTAAY ARGGGLEIVG QRLSKLADLY KVPFEFNAAA ISGSEVQLEN 360
LEVRPGEALA VNFSMMLHHM PDESVSIQNH RDRLLRLVKG LSPKVVTLVE QEANTNTAPF 420
FHRFLETMNH YGAIFDSIDV ALPRDSKDRI NVEQHCLARE IVNLIACEGA ERVERHEPFG 480
KWRSRFIMAG FTPYPLSPFV NATIKTLLEN YNDNYTLEER DGALFLGWKN QAIIVSSAWR 540
*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JF440647 | 0.0 | JF440647.1 Citrus medica var. sarcodactylis GRAS family transcription factor mRNA, complete cds. |
