PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008008m
Common NameCICLE_v10008008mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 520aa    MW: 56304 Da    PI: 4.6894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008008mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11299344555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  Ciclev10008008m 299 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 344
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-17292354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-12292348No hitNo description
PROSITE profilePS5088817.263294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16296353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-9299344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDEYLDHYFS SSSWSDVNAK ERSSWDYSEP LQQNQLLPNS IGVYKDDEKN SPVGIAMEGL  60
AAQDTSSFVL GEESEYGIDK NLLSEETQYE KDGQNCNGNL SSMNRSLKLG NVGLQYDPAI  120
PTLGSMNLGS PKQLPLIGEM TTSPSFVDSE HVGGNSSELS DIQRSLRDLQ TISPSPELWL  180
QTSYEEVSSL SSVIEQPRTR GFYLQGATMN HDLDTTGNRY VGMDKILQFD CLSASIVAKG  240
EQELPNHPLS CFSSRPLPTV PTVGLPSLQQ TASANPTGGC NGTGKARVRA RRGQATDPHS  300
IAERLRREKI AERMKNLQEL VPNSNKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGAAGA  360
VLPLITDGQA EASKGLSLSP QADQGVDISL NSDQIAFEEE VVKLMESNVT KAMQYLQNKG  420
LCLMPIALAT AISSGKASSS DTISEENKFC FSNGLVQSNS SSASSNSSLP NNGINQMPLN  480
TNIIIGKPIG ESILVNGCNR AVKEERNSQC TARELKPKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285293ARVRARRGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452905.10.0uncharacterized protein LOC18054737 isoform X1
RefseqXP_024048004.10.0uncharacterized protein LOC18054737 isoform X1
RefseqXP_024048005.10.0uncharacterized protein LOC18054737 isoform X1
RefseqXP_024048006.10.0uncharacterized protein LOC18054737 isoform X1
TrEMBLV4UPF50.0V4UPF5_9ROSI; Uncharacterized protein
STRINGXP_006452905.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16266914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-59LJRHL1-like 3