PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10008074m

Common Name

CICLE_v10008074mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HRT-like

Protein Properties

Length: 504aa MW: 56088.3 Da PI: 9.5985

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10008074m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.9	1.4e-17	260	290	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGsvC+++Pv+ RKRC eH GmRi Ciclev10008074m 260 ICGVSLGDGSVCQMPPVEQRKRCIEHRGMRI 290 8*****************************7 PP
2	HRT-like	52.8	6.4e-17	380	410	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+ G++C+rqPvkgR RCe+HKG +i Ciclev10008074m 380 ICGVELGGGTFCTRQPVKGRVRCEQHKGWKI 410 8***************************775 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MFVKGDENPV EAVVESICNI MVEKIIEKME AALLAIIARI QREDCERTNH DSQFSKWKEL 60 VGPSDWENHS HGKEGAERYK VHNLPNDTGP GLYELGIAVP GAGVIVVYVG QAESVRARLQ 120 AYGRTGAHLN SGCDSGRYFE DIFRRGYSIV YRSAPMKNKE DAEKTERKIL DKFDYAWNKG 180 NNGKRRHADV RRKLDEVASN NIQFPKTIRN LLRFNHWPAD IKIKASPEGH NFLPQIIKFT 240 KSQPRLVLDR YGADEGHTGI CGVSLGDGSV CQMPPVEQRK RCIEHRGMRI RASTLTMKGK 300 AKVCDVDPTK LPMVAQKCSV SEGEERNRRK NCGSNSKSTG SSQYGHDAYV DSNAPGALNS 360 PEMYRQGRVQ SKAKLQYDTI CGVELGGGTF CTRQPVKGRV RCEQHKGWKI QGTKSTSVAQ 420 DHKSDVYGAS YGSFVCGAQT LDGSYCRRQV KANTKCWQHS DKSLTIRSWS DWNYGGSSLC 480 GAPTRNGSSC RRSVKGGGRC WQH*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MFVKGDENPV EAVVESICNI MVEKIIEKME AALLAIIARI QREDCERTNH DSQFSKWKEL  60
VGPSDWENHS HGKEGAERYK VHNLPNDTGP GLYELGIAVP GAGVIVVYVG QAESVRARLQ  120
AYGRTGAHLN SGCDSGRYFE DIFRRGYSIV YRSAPMKNKE DAEKTERKIL DKFDYAWNKG  180
NNGKRRHADV RRKLDEVASN NIQFPKTIRN LLRFNHWPAD IKIKASPEGH NFLPQIIKFT  240
KSQPRLVLDR YGADEGHTGI CGVSLGDGSV CQMPPVEQRK RCIEHRGMRI RASTLTMKGK  300
AKVCDVDPTK LPMVAQKCSV SEGEERNRRK NCGSNSKSTG SSQYGHDAYV DSNAPGALNS  360
PEMYRQGRVQ SKAKLQYDTI CGVELGGGTF CTRQPVKGRV RCEQHKGWKI QGTKSTSVAQ  420
DHKSDVYGAS YGSFVCGAQT LDGSYCRRQV KANTKCWQHS DKSLTIRSWS DWNYGGSSLC  480
GAPTRNGSSC RRSVKGGGRC WQH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475410.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
Refseq	XP_024033723.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2 isoform X1
TrEMBL	A0A2H5PDL4	0.0	A0A2H5PDL4_CITUN; Uncharacterized protein
TrEMBL	V4WDV6	0.0	V4WDV6_9ROSI; Uncharacterized protein
STRING	XP_006451429.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-72	effector of transcription2

Link Out ? help Back to Top
Phytozome	Ciclev10008074m
Entrez Gene	18055625