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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10008226m |
| Common Name | CICLE_v10008226mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
GRAS |
| Protein Properties |
Length: 460aa MW: 52033.3 Da PI: 7.0641 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10008226m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 400.6 | 1.6e-122 | 67 | 458 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..........sseelaalkl 83
+++lL++cAe +s++d+++a++l++ ls +sp+gd+++Rl++ f +AL+ rl+ + + + ++ ++t++ + +al+
Ciclev10008226m 67 MRQLLISCAELFSQSDFSAAHRLISILSASSSPYGDSIERLVHQFIRALSLRLNLhHANATLLMMNITTTTTATtlpyntttynD---RNALQS 157
589**************************************************98444455555555555554456665554321...222222 PP
GRAS 84 ....fsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLa 166
+++++P+++fshltaNqaIle+++ g++ +Hi+Dfdi++G+QWp+L+qaL +R ++pp+lRiTg g+ + e l++tgerL
Ciclev10008226m 158 cylsLNQITPFIRFSHLTANQAILESLQvGQQSIHILDFDIMHGVQWPPLMQALVERFknsnmlQPPPMLRITGTGN----DIEILQRTGERLL 247
3567**********************98466**************************976777777***********....9************ PP
GRAS 167 kfAeelgvpfefnvl..vak...rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
kfA++lg++f+f++l + + +++ +++L + p+E+laVn++l lh+ll +++++++ + +L+ +k l+P+vv+++e+ea+hn++ Fl+
Ciclev10008226m 248 KFAQSLGLRFQFHPLllMNDdptSVAFYLPSALTILPDETLAVNCMLFLHKLL-KDHDTRD-LRLFLHKIKALNPRVVTIAEREASHNHPLFLQ 339
**************97633312134444789**********************.5555555.69****************************** PP
GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
rf+ea+++y a+fdslea+lp++s+er vE++++greiv++va+eg++r+erhe++ +W++ l+++G+++vpls +a +qaklllr ++ s+g
Ciclev10008226m 340 RFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYpSEG 433
********************************************************************************************** PP
GRAS 349 yrveeesgslvlgWkdrpLvsvSaW 373
y+++ ++sl+lgW++r+L+svS+W
Ciclev10008226m 434 YQLQVLNNSLFLGWQNRALFSVSSW 458
************************* PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010223 | Biological Process | secondary shoot formation |
| Sequence ? help Back to Top |
| Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MLGSLNNTTS SRHDQQQEED PLAAAASSSD LMLQHHQPLH QSHHQYSSSS SSSRVGGLMN 60
SPPAIHMRQL LISCAELFSQ SDFSAAHRLI SILSASSSPY GDSIERLVHQ FIRALSLRLN 120
LHHANATLLM MNITTTTTAT TLPYNTTTYN DRNALQSCYL SLNQITPFIR FSHLTANQAI 180
LESLQVGQQS IHILDFDIMH GVQWPPLMQA LVERFKNSNM LQPPPMLRIT GTGNDIEILQ 240
RTGERLLKFA QSLGLRFQFH PLLLMNDDPT SVAFYLPSAL TILPDETLAV NCMLFLHKLL 300
KDHDTRDLRL FLHKIKALNP RVVTIAEREA SHNHPLFLQR FVEAVDHYGA IFDSLEATLP 360
PNSRERLAVE QVWFGREIVE IVATEGENRK ERHERFDSWE MILRSCGYSN VPLSGYALSQ 420
AKLLLRLHYP SEGYQLQVLN NSLFLGWQNR ALFSVSSWH*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
