PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008228m
Common NameCICLE_v10008228mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 460aa    MW: 49915.7 Da    PI: 7.3575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008228mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.6e-063493871154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Ciclev10008228m 349 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 387
                      5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.97338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.68E-7348392No hitNo description
SuperFamilySSF474592.62E-11348400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0051349393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-9352394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MADEFNTSTN WWESSRNRFD SGSSSSATSG LNSNTSSFGW PVTTHHHHHH HHQMIDIKPN  60
TAATTRSSID SSASVSGSSV VFQDSHKLQQ PPAVDSDLQM MGLGLSSPSS LDWNQALLVT  120
RGDKSEGSFR SMLQENMNST SGYRGFSLDH QQQIQFSPHH GGSSSDSTVT CQGLPSSFQM  180
DSSSPVNLYG NVPIFQGGGI LGSDNNQNYQ YGAAAAASSS YGMNTSELSP SWSAAATNNN  240
NKVPQFLRTS PPKQQQQQQQ QQQLHFSNNA PFWNASAPTS LNDVRSPNFF PSLQTPYATQ  300
TFDEKPKHHV SEVRDNSSSI AVKKSSGGEP ASKRAKNDQP ASPLPAFKVR KEKMGDRITA  360
LQQLVSPFGK TDTASVLSEA IEYIKFLHDQ VAVLSTPYMK SGGAPIPHQP NSEKVKDSEG  420
PKQDLRSRGL CLVPVSSTFP VTHETTVDFW TPTFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452112.10.0transcription factor bHLH123 isoform X1
RefseqXP_006475252.10.0transcription factor bHLH123 isoform X1
SwissprotQ8GXT37e-88BH123_ARATH; Transcription factor bHLH123
TrEMBLV4UGY70.0V4UGY7_9ROSI; Uncharacterized protein
STRINGXP_006475252.10.0(Citrus sinensis)
STRINGXP_006452112.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]