PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008768m
Common NameCICLE_v10008768mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 356aa    MW: 39667 Da    PI: 6.376
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008768mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.41.8e-36131052103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F++k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll+
  Ciclev10008768m  13 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHLLK 97 
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i r+k++
  Ciclev10008768m  98 NIVRRKHS 105
                      ****9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-549102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-3410102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3810102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEPNNTNNVI APFVMKTYQM VNDPTTDSLI SWGKANNSFI VVDPLDFSQR ILPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDK WEFANEWFLR GQKHLLKNIV RRKHSSNRSA HHMMMRGGAG  120
DQDLDDEEIV MEIARLRQEQ KSLDEELQGM NKRLEATERR PEQMMAFLYK VVEDPDLLPR  180
IIMEKESTTN RNNYYLGDKK RRLMISSSSQ QQQQPSNSSS SGMAASSSIK SEEEEVGNIG  240
VISSSSPDSG FDNSNNNNSN NFCQSSPSPD SNNNNNNYSV SSSGWLLGQS RQVMNSYGCA  300
AIPSPVSAIP ATARNSTSSG TSTNGQMGYF GEMVTGVESR PPMPPYPFSL LGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-251010226129Heat shock factor protein 1
5d5v_B3e-251010226129Heat shock factor protein 1
5d5v_D3e-251010226129Heat shock factor protein 1
5hdg_A2e-25101027110Heat shock factor protein 1
5hdn_A2e-25101027110Heat shock factor protein 1
5hdn_B2e-25101027110Heat shock factor protein 1
5hdn_C2e-25101027110Heat shock factor protein 1
5hdn_D2e-25101027110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451150.10.0heat stress transcription factor C-1
SwissprotQ9LV522e-95HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLV4UJG90.0V4UJG9_9ROSI; Uncharacterized protein
STRINGXP_006451150.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-94heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]