PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009227m
Common NameCICLE_v10009227mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 262aa    MW: 29183.3 Da    PI: 8.6533
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009227mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-1619511143
                     HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsst 43
                      tf kR+n ++KKA+E  +LCd+ev++ii++++
  Ciclev10009227m 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPK 51
                     59*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-8160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.171161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-16779IPR002100Transcription factor, MADS-box
PfamPF003198.3E-161454IPR002100Transcription factor, MADS-box
CDDcd002667.93E-161979No hitNo description
PRINTSPR004045.6E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MACQALKLEP TKQEKACLAT FKKRKNSLMK KAYEFTTLCD VEVCIIIYGP KVKGHSLKPE  60
TWTSKEGELT SIIRKYEKKI SAVDHGQHRT LSLSKFDESK MRQVDDAATR ACKKICVGDF  120
TTWDQGMDSL SEDQLKMILS TMDDKLKDVD RKLNMIKRDQ NVVNKATSRK LEHDHSNDAK  180
SLVNLQPAYQ VSQKLPSDSS FMEIQCGGGS GSMIPFTPLQ GQINWNSSLT MSPTSSGIYD  240
GSAAQAKKSN DILKDQSSQE E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452287.10.0agamous-like MADS-box protein AGL82
TrEMBLV4UHC30.0V4UHC3_9ROSI; Uncharacterized protein
STRINGXP_006452287.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2105535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.16e-18AGAMOUS-like 82