PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009250m
Common NameCICLE_v10009250mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 259aa    MW: 28839.4 Da    PI: 8.5655
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009250mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.2e-2798158159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ k+++ pr+Y+rC +a  gCpvkkkv+r+ ed+++++ tYegeHnh+
  Ciclev10009250m  98 VKDGHQWRKYGQKVTKDNPSPRAYFRCLMAssGCPVKKKVQRCMEDKSFLVATYEGEHNHD 158
                      58*************************98888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-2890159IPR003657WRKY domain
PROSITE profilePS5081126.79693160IPR003657WRKY domain
SuperFamilySSF1182901.7E-2496159IPR003657WRKY domain
SMARTSM007746.7E-3098159IPR003657WRKY domain
PfamPF031061.8E-2399158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDSHNSPKEK MKLLQAKLEH VRKQNENLRH LVEAMNNQCN DLLARIHEAN RTYSSSDHHH  60
FNNNINIGGV TAQVPPVPNA KQSRIFVKAD SKDSSLIVKD GHQWRKYGQK VTKDNPSPRA  120
YFRCLMASSG CPVKKKVQRC MEDKSFLVAT YEGEHNHDVQ CSSLGQSSSL TNYCSPKSSI  180
VHCPDYQTTD SFGSDVTLDL TLSGSNQETR PPRNLMQVCD DKKKIEEYVA SLTKDPSFTI  240
AVADAVASSI NGPPHRPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20971591373WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.65770.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8199550.0KJ819955.1 Citrus japonica WRKY40 (WRKY40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450292.10.0WRKY transcription factor WRKY76
RefseqXP_024034155.10.0WRKY transcription factor WRKY76
TrEMBLV4UBV80.0V4UBV8_9ROSI; Uncharacterized protein
STRINGXP_006450292.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156101014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.17e-39WRKY DNA-binding protein 40