PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009285m
Common NameCICLE_v100092852mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 251aa    MW: 28753.1 Da    PI: 8.618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009285mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-1358100754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A++YI++L
  Ciclev10009285m  58 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIQEL 100
                      57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.95251100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-1852115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-1254105No hitNo description
SMARTSM003531.6E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-1757115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-1158100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MENLGEDYQQ EYQNYWETKM FLQNEEFDTW PLDEAFSGYY DSSSPDGAAS SAASKNIVSE  60
RNRRKKLNER LFALRSVVPN ISKMDKASII KDAIDYIQEL HEQEKRIRDE IMELESGKSK  120
KNFGFDFEQE LPVLLRPKKK KIDRFFDSAG SRTAPVEILE LRVKTMGEKI LVVSVTCSKR  180
TDTMVKLCEA FESLKLKIIT ANITAVAGRL LKTAFIEVSF LFLFSFLLNL SSSIILIQTK  240
KKDKNFTPIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1356100953Transcription factor MYC2
5gnj_B2e-1356100953Transcription factor MYC2
5gnj_E2e-1356100953Transcription factor MYC2
5gnj_F2e-1356100953Transcription factor MYC2
5gnj_G2e-1356100953Transcription factor MYC2
5gnj_I2e-1356100953Transcription factor MYC2
5gnj_M2e-1356100953Transcription factor MYC2
5gnj_N2e-1356100953Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.93090.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453237.11e-159transcription factor bHLH35
RefseqXP_006474281.11e-159transcription factor bHLH35
SwissprotQ2HIV96e-86BH035_ARATH; Transcription factor bHLH35
TrEMBLV4UV050.0V4UV05_9ROSI; Uncharacterized protein
STRINGXP_006453236.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-79bHLH family protein