PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009286m
Common NameCICLE_v10009286mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 251aa    MW: 28439 Da    PI: 9.2942
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009286mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W + Ed++l d++k +G g W+ I++  g++R++k+c++rw +yl
  Ciclev10009286m 18 RGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYL 65
                     89********************************************97 PP
2Myb_DNA-binding54.13.5e-1771114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w++
  Ciclev10009286m  71 RGNFSKDEEDLIVRLHKLLGNR-WALIAGRLP-GRTDNDIKNYWNT 114
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8371365IPR017930Myb domain
SuperFamilySSF466892.33E-2816112IPR009057Homeodomain-like
SMARTSM007172.6E-121767IPR001005SANT/Myb domain
PfamPF002496.2E-131865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-221972IPR009057Homeodomain-like
CDDcd001672.69E-82065No hitNo description
PROSITE profilePS5129425.70566120IPR017930Myb domain
SMARTSM007172.9E-1670118IPR001005SANT/Myb domain
PfamPF002491.5E-1571114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2473120IPR009057Homeodomain-like
CDDcd001673.00E-1173116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAGKRKTPCC SKGEGLNRGA WKAVEDKILT DYIKAYGEGK WRHIPKAAGL KRCGKSCRLR  60
WMNYLRPDIK RGNFSKDEED LIVRLHKLLG NRWALIAGRL PGRTDNDIKN YWNTKLSKRV  120
DANHHHHQNR SKVEKKPKTR SSSGVVPRPQ YKKTEKHDAA GGVADDDDDR EAPILFDYVP  180
VQSQCSYGCK EEKSSGSDHE YTVDFDVGGK SLLDLLDANL NNLDDFGHDI YNNMDNHIIQ  240
ASLQSNLGFW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26161225110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5731490.0AB573149.1 Citrus unshiu genomic DNA, polyembryony locus, cultivar: Miyagawa wase.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453008.10.0transcription factor WER isoform X2
TrEMBLV4U0980.0V4U098_9ROSI; Uncharacterized protein
STRINGXP_006453008.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-59myb domain protein 3