PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009338m
Common NameCICLE_v10009338mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27394.5 Da    PI: 8.3606
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009338mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.45.9e-26959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien +nrqvtfskRrng++KKA EL +LCda+v+++i sst k +ey+s
  Ciclev10009338m  9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
                     79***********************************************86 PP
2K-box68.32.5e-2371154184
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      yqk+  ++l+++++e++ ++l  +++ ++ L++++R+++Ge+L++L+l+eL  Leq++ ++lk iR+ K+++l +qi++ ++k 
  Ciclev10009338m  71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIRECKDQVLARQINTFKRKV 154
                      78888889**************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.614161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-37160IPR002100Transcription factor, MADS-box
CDDcd002654.98E-37280No hitNo description
SuperFamilySSF554551.57E-32290IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-25323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-253859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-1582154IPR002487Transcription factor, K-box
PROSITE profilePS5129713.06484203IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKMEMKR IENATNRQVT FSKRRNGLFK KARELTILCD AKVSILICSS TAKAHEYISP  60
STTTKQLLDL YQKTLRVDLW SSHYEKMLEN LGAVEQVNRI LKKQIRQRMG ESLNDLTLEE  120
LTGLEQDILD GLKIIRECKD QVLARQINTF KRKVCSVCHI ILKTYDSSLS FILLFVGNFQ  180
VRGVQKENKS LQDGFMINAK EEDPHYEYEL VDNGEHCDSD FGFQNEGPGI FALRLQPN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2186140.0AB218614.1 Citrus unshiu CitMADS8 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453002.11e-150floral homeotic protein PMADS 1
SwissprotE0CPH47e-78AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLV4U0931e-176V4U093_9ROSI; Uncharacterized protein
STRINGXP_006453003.11e-177(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3284322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]