PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009522m
Common NameCICLE_v10009522mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 203aa    MW: 22984.7 Da    PI: 7.9982
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009522mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-172373656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++++eq+++Le+ F  ++++++e + +LA++lg++ rqV vW+qN+Ra++k
  Ciclev10009522m 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73
                     689***********************************************9 PP
2HD-ZIP_I/II98.75.5e-3221111393
      HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      k+rl++eqv++LE+sF++++kL++e K +la++Lg+ +rqvavW+qn+RAR+kt+ lE dy++++ ++++  ++++rLek+v+ L+eel++
  Ciclev10009522m  21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLELDYNTIQVKLENALADKRRLEKDVKLLKEELRQ 111
                      99*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.7871575IPR001356Homeobox domain
SMARTSM003894.4E-131779IPR001356Homeobox domain
SuperFamilySSF466894.71E-161883IPR009057Homeodomain-like
CDDcd000861.79E-122176No hitNo description
Gene3DG3DSA:1.10.10.602.6E-172382IPR009057Homeodomain-like
PfamPF000469.6E-152373IPR001356Homeobox domain
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDIADTQQNQ KHPPPNKLNI KKRLNQEQVR VLERSFTTKK KLDTELKLKL ANQLGVPARQ  60
VAVWYQNKRA RWKTQSLELD YNTIQVKLEN ALADKRRLEK DVKLLKEELR QAQEILFAKL  120
MTSNNNNNQE AVEAITCNNN SNYSSATSCS AEKAGSCSSF SLLHEEYHVH GNDHDHDQGL  180
QIDHELFACL IGNGGSAWGS NE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451774.11e-149homeobox-leucine zipper protein ATHB-52
RefseqXP_006464812.11e-149homeobox-leucine zipper protein ATHB-52
TrEMBLA0A2H5PUT71e-148A0A2H5PUT7_CITUN; Uncharacterized protein
TrEMBLV4WEM71e-148V4WEM7_9ROSI; Uncharacterized protein
STRINGXP_006464812.11e-149(Citrus sinensis)
STRINGXP_006451774.11e-149(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121072632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.15e-22homeobox protein 52