PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009526m
Common NameCICLE_v10009526mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 203aa    MW: 22647.6 Da    PI: 9.3015
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009526mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-18555155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Ciclev10009526m  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAVLMNG 55
                     59*****999.**********8.....334*********************977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.03E-22565No hitNo description
SMARTSM003804.7E-39669IPR001471AP2/ERF domain
PROSITE profilePS5103221.957663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32663IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-20664IPR016177DNA-binding domain
PfamPF008477.6E-11651IPR001471AP2/ERF domain
PRINTSPR003673.2E-10718IPR001471AP2/ERF domain
PRINTSPR003673.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVQSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA VLMNGQNAKT  60
NFPILKPNNP EAEGTKGSSY NIPEKGFSEL LNSKLRKCCK DLSPSLTCLR LDNDNSHIGV  120
WQKRAGSRSG SSWVMRVELG KNKKAQNLEN GLPFPSSRSS PTLVDDEVEA GNGREDEDRI  180
AMQMIEELLN WNCPISSPSS EI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-16264164ATERF1
3gcc_A2e-16264164ATERF1
5wx9_A4e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471401e-69EF147140.1 Populus trichocarpa clone WS01228_C18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450438.11e-149ethylene-responsive transcription factor SHINE 2
RefseqXP_006483359.11e-149ethylene-responsive transcription factor SHINE 2
SwissprotQ3E9588e-78SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A067FE731e-147A0A067FE73_CITSI; Uncharacterized protein
TrEMBLA0A2H5P0E81e-147A0A2H5P0E8_CITUN; Uncharacterized protein
TrEMBLV4TT101e-147V4TT10_9ROSI; Uncharacterized protein
STRINGXP_006483359.11e-148(Citrus sinensis)
STRINGXP_006450438.11e-148(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.15e-71ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]